MUFFIN
stable

How to use MUFFIN

  • Installation
  • Install optional R dependencies
  • Loading your data
  • Setting normalization factors
  • Removing unused variables
  • Count Modelling and transformation
  • Feature Selection
  • Dimensionnality reduction
  • Downstream analyses

Examples

  • Starter : Clustering of 3k PBMCs sequenced by 10X scRNA-seq
  • Paper example : 10k PBMCs sequenced by 10X scATAC-seq
  • Paper example : H3K4Me3 occupancy in immune cells via ChIP-seq
  • Paper example : Landscape of open chromatin in cancers via ATAC-seq (TCGA)
  • Paper example : Clustering of 10k PBMCs sequenced by 10X scRNA-seq

API reference

  • muffin.load
  • muffin.tools
  • muffin.great
  • muffin.peakMerge
  • muffin.plots
MUFFIN
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© Copyright 2023, Pierre de Langen. Revision 8bee841a.

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